U12DB - U12 Intron Database | Tool name | U12DB - U12 Intron Database |
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| URL | http://genome.crg.es/cgi-bin/u12db/u12db.cgi |
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| Important features | |
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| Citations | Alioto TS. U12DB: a database of orthologous U12-type spliceosomal introns.
Nucleic AcIDs Res. 2007 Jan;35(Database issue):D110-5. Epub 2006 Nov 1. PubMed
PMID: 17082203; PubMed Central PMCID: PMC1635337.
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Didn't return any results with certain gene names like brca1 or mybl2. 2) Links to UCSC genome Browser is also given. 3) Intronic information is also given, such as junctions and sequence. 4) The donor, acceptor and branch point score is given under splice site details. 5) Gene information gives the description about the gene and the chromosome number. |
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| Function | Intron detail, Intron detail: sequence, Graphical display of transcripts, Splice site details, Gene Information, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Intron ID, Intron cluster ID, Gene ID, Ensembl Gene ID, Gene Name, Gene Description |
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| Output file format | |
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| Limitation | |
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